About me
Jess Smith
I do bioinformatics and stuff.
Research Statement
"The robots haven't eaten me yet!"
Domain expertise
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Off-target analysis for gene editing
CRISPR and shit
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Antibody discovery
Nanobodies and shit
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Reagent design
Indexes, primers, probes,
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Long reads
Pacbio, ONT
Skills
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Building tools for bioinformatics
I build python tools from scratch. Analysis. ML. Modern python. Using AI agents.
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Scalable, reproducible analysis
Nextflow, WDL, Latch, Manifold, DNAnexus, Seqera, AWS. AWS cert. Docker
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Assay development
"Molecular debuggging." Benchling API. Data integration. Complinance CLIA/CAP/FDA
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People and scientific leadership
Mentoring, team building, Agile, docs
Tools
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Python
modern python and stuff
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Workflow tools
Nextflow, WDL, Latch, snakemake, Manifold, DNAnexus, Seqera, AWS. AWS cert. Docker
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Other tools
GHA? Docker? Dunno
Education
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PhD in Physical Chemistry
University of California, Berkeley, 2014
Dissertation: "Anisotropies in discrete DNA-assembled plasmonic nanostructures"
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BS in Chemistry
University of Washington, 2008
with College Honors